HL_5E81_205

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAGUGAG

Length

7 nucleotides

Bulged bases

5E81|1|1K|U|17, 5E81|1|1K|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_205 not in the Motif Atlas

Homologous match to HL_2AZX_004

Geometric discrepancy: 0.2179

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5E81|1|1K|C|13
5E81|1|1K|A|14
5E81|1|1K|G|15
5E81|1|1K|U|17
5E81|1|1K|G|18
5E81|1|1K|A|21
5E81|1|1K|G|22

Current chains

Chain 1K

tRNA-Lys

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA