HL_5E81_209
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GACU(U8U)UU(T6A)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: U8U, T6A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5E81_209 not in the Motif Atlas
- Homologous match to HL_5E81_206
- Geometric discrepancy: 0.105
- The information below is about HL_5E81_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5E81|1|1L|G|30
5E81|1|1L|A|31
5E81|1|1L|C|32
5E81|1|1L|U|33
5E81|1|1L|U8U|34
5E81|1|1L|U|35
5E81|1|1L|U|36
5E81|1|1L|T6A|37
5E81|1|1L|A|38
5E81|1|1L|PSU|39
5E81|1|1L|C|40
Current chains
- Chain 1L
- tRNA-Lys
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3A
- 30S ribosomal protein S12
- Chain 4L
- mRNA
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