HL_5E81_212

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

5E81|1|2K|U|34

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

54

Unit IDs

5E81|1|2K|G|32
5E81|1|2K|OMC|33
5E81|1|2K|U|34
5E81|1|2K|C|35
5E81|1|2K|A|36
5E81|1|2K|U|37
5E81|1|2K|A|38
5E81|1|2K|A|39
5E81|1|2K|C|40

Current chains

Chain 2K

tRNA-fMet

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3K

Transfer RNA; tRNA

Chain 4K

mRNA

Chain 8E

30S ribosomal protein S9