HL_5E81_214
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CAGCCCGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5E81|1|2L|C|16, 5E81|1|2L|G|19, 5E81|1|2L|G|20, 5E81|1|2L|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5E81_214 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1489
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5E81|1|2L|C|13
5E81|1|2L|A|14
5E81|1|2L|G|15
5E81|1|2L|C|16
5E81|1|2L|C|17
5E81|1|2L|C|18
5E81|1|2L|G|19
5E81|1|2L|G|20
5E81|1|2L|U|21
5E81|1|2L|A|22
5E81|1|2L|G|23
Current chains
- Chain 2L
- tRNA-fMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 49
- 50S ribosomal protein L5
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