HL_5E81_216
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5E81_216 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1135
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
5E81|1|2L|G|54
5E81|1|2L|5MU|55
5E81|1|2L|PSU|56
5E81|1|2L|C|57
5E81|1|2L|A|58
5E81|1|2L|A|59
5E81|1|2L|A|60
5E81|1|2L|U|61
5E81|1|2L|C|62
Current chains
- Chain 2L
- tRNA-fMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain 49
- 50S ribosomal protein L5
Coloring options: