HL_5E81_218

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_218 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.4524

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

5E81|1|3K|G|53
5E81|1|3K|U|54
5E81|1|3K|U|55
5E81|1|3K|C|56
5E81|1|3K|G|57
5E81|1|3K|A|58
5E81|1|3K|A|59
5E81|1|3K|U|60
5E81|1|3K|C|61

Current chains

Chain 3K

tRNA-Lys

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1