HL_5E81_225

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGGGAUGACCCC

Length

13 nucleotides

Bulged bases

5E81|1|14|G|1176, 5E81|1|14|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_225 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2706

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5E81|1|14|G|1168
5E81|1|14|G|1169
5E81|1|14|G|1170
5E81|1|14|G|1171
5E81|1|14|G|1173
5E81|1|14|A|1174
5E81|1|14|U|1175
5E81|1|14|G|1176
5E81|1|14|A|1177
5E81|1|14|C|1178
5E81|1|14|C|1179
5E81|1|14|C|1180
5E81|1|14|C|1181

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 95

50S ribosomal protein L21