HL_5EAO_001

3D structure

PDB id

5EAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUGAUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EAO_001 not in the Motif Atlas

Geometric match to HL_6LTU_001

Geometric discrepancy: 0.0919

The information below is about HL_6LTU_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

5EAO|1|A|C|16
5EAO|1|A|U|17
5EAO|1|A|G|18
5EAO|1|A|A|19
5EAO|1|A|U|20
5EAO|1|A|G|21

Current chains

Chain A

RNA (48-MER)

Nearby chains

Chain B

RNA (5'-R(*GP*GP*GP*CP*GP*U*(CVC)*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3')