HL_5EL4_007

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1187

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5EL4|1|13|U|296
5EL4|1|13|G|297
5EL4|1|13|A|298
5EL4|1|13|G|299
5EL4|1|13|A|300
5EL4|1|13|G|301

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 4E

30S ribosomal protein S5

Chain 8I

30S ribosomal protein S17