HL_5EL4_045

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5EL4|1|14|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_045 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.072

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5EL4|1|14|G|382
5EL4|1|14|U|383
5EL4|1|14|U|384
5EL4|1|14|C|385
5EL4|1|14|G|386
5EL4|1|14|U|387
5EL4|1|14|G|388
5EL4|1|14|G|389
5EL4|1|14|A|390
5EL4|1|14|G|391
5EL4|1|14|C|392

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28