HL_5EL4_068

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

5EL4|1|14|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_068 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0974

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5EL4|1|14|C|1451
5EL4|1|14|A|1453
5EL4|1|14|U|1454
5EL4|1|14|G|1455
5EL4|1|14|G|1456
5EL4|1|14|A|1457
5EL4|1|14|C|1458
5EL4|1|14|G|1459

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17