HL_5EL4_081

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5EL4|1|14|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_081 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1206

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5EL4|1|14|G|1949
5EL4|1|14|G|1950
5EL4|1|14|U|1951
5EL4|1|14|A|1952
5EL4|1|14|A|1953
5EL4|1|14|G|1954
5EL4|1|14|U|1955
5EL4|1|14|U|1956
5EL4|1|14|C|1957

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 25

50S ribosomal protein L14