HL_5EL4_099

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

5EL4|1|14|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_099 not in the Motif Atlas

Geometric match to HL_7A0S_074

Geometric discrepancy: 0.274

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5EL4|1|14|G|2744
5EL4|1|14|C|2745
5EL4|1|14|U|2746
5EL4|1|14|G|2747
5EL4|1|14|A|2748
5EL4|1|14|A|2749
5EL4|1|14|A|2750
5EL4|1|14|G|2751
5EL4|1|14|C|2752
5EL4|1|14|A|2753
5EL4|1|14|U|2754
5EL4|1|14|C|2755
5EL4|1|14|U|2756
5EL4|1|14|A|2757
5EL4|1|14|A|2758
5EL4|1|14|G|2759
5EL4|1|14|C|2760

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6