HL_5EL4_115

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

5EL4|1|1G|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_115 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3782

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5EL4|1|1G|C|457
5EL4|1|1G|C|458
5EL4|1|1G|G|464
5EL4|1|1G|A|465
5EL4|1|1G|C|466
5EL4|1|1G|G|467
5EL4|1|1G|A|468
5EL4|1|1G|G|474
5EL4|1|1G|G|475

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16