HL_5EL4_147

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5EL4|1|1H|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_147 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.076

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5EL4|1|1H|G|327
5EL4|1|1H|U|328
5EL4|1|1H|G|329
5EL4|1|1H|A|330
5EL4|1|1H|A|331
5EL4|1|1H|A|332
5EL4|1|1H|G|333
5EL4|1|1H|C|334
5EL4|1|1H|C|335

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24