HL_5EL4_163

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_163 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0738

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5EL4|1|1H|G|978
5EL4|1|1H|G|979
5EL4|1|1H|A|980
5EL4|1|1H|A|981
5EL4|1|1H|C|982
5EL4|1|1H|A|983
5EL4|1|1H|A|984
5EL4|1|1H|C|985

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain L8

50S ribosomal protein L30