HL_5EL4_165

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_165 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1982

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5EL4|1|1H|G|1170
5EL4|1|1H|G|1171
5EL4|1|1H|G|1173
5EL4|1|1H|A|1174
5EL4|1|1H|U|1175
5EL4|1|1H|G|1176
5EL4|1|1H|A|1177
5EL4|1|1H|C|1178
5EL4|1|1H|C|1179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains