HL_5EL4_235
3D structure
- PDB id
- 5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGGUCUCCU
- Length
- 9 nucleotides
- Bulged bases
- 5EL4|1|1G|U|841, 5EL4|1|1G|C|842, 5EL4|1|1G|U|843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL4_235 not in the Motif Atlas
- Geometric match to HL_7VTI_001
- Geometric discrepancy: 0.239
- The information below is about HL_7VTI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
5EL4|1|1G|G|836
5EL4|1|1G|G|837
5EL4|1|1G|G|838
5EL4|1|1G|U|841
5EL4|1|1G|C|842
5EL4|1|1G|U|843
5EL4|1|1G|C|848
5EL4|1|1G|C|849
5EL4|1|1G|U|850
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 12
- 30S ribosomal protein S2
- Chain 52
- 30S ribosomal protein S6
- Chain 9A
- 30S ribosomal protein S18
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