HL_5EL5_120

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

5EL5|1|1G|U|841, 5EL5|1|1G|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_120 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.5732

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5EL5|1|1G|G|837
5EL5|1|1G|G|838
5EL5|1|1G|U|841
5EL5|1|1G|C|842
5EL5|1|1G|U|843
5EL5|1|1G|C|848
5EL5|1|1G|C|849

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 9A

30S ribosomal protein S18