HL_5EL5_138

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

5EL5|1|1H|U|163, 5EL5|1|1H|U|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_138 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2841

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5EL5|1|1H|C|155
5EL5|1|1H|U|161
5EL5|1|1H|U|162
5EL5|1|1H|U|163
5EL5|1|1H|U|164
5EL5|1|1H|U|165
5EL5|1|1H|G|171

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28