HL_5EL5_159

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAGGGGCCUCCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_159 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.5436

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL5|1|1H|U|877
5EL5|1|1H|A|878
5EL5|1|1H|G|879
5EL5|1|1H|G|880
5EL5|1|1H|G|881
5EL5|1|1H|G|882
5EL5|1|1H|C|893
5EL5|1|1H|C|894
5EL5|1|1H|U|895
5EL5|1|1H|C|897
5EL5|1|1H|C|898
5EL5|1|1H|A|899

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16