HL_5EL5_161

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_161 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0832

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5EL5|1|1H|G|978
5EL5|1|1H|G|979
5EL5|1|1H|A|980
5EL5|1|1H|A|981
5EL5|1|1H|C|982
5EL5|1|1H|A|983
5EL5|1|1H|A|984
5EL5|1|1H|C|985

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain D8

50S ribosomal protein L21

Chain L8

50S ribosomal protein L30