HL_5EL5_200

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5EL5|1|1H|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL5_200 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0782

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5EL5|1|1H|G|2819
5EL5|1|1H|A|2820
5EL5|1|1H|A|2821
5EL5|1|1H|G|2822
5EL5|1|1H|A|2823
5EL5|1|1H|C|2824
5EL5|1|1H|C|2825
5EL5|1|1H|A|2826
5EL5|1|1H|C|2827

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17