HL_5EL5_213
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GG(OMC)UCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL5_213 not in the Motif Atlas
- Homologous match to HL_2BTE_002
- Geometric discrepancy: 0.2599
- The information below is about HL_2BTE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5EL5|1|2L|G|31
5EL5|1|2L|G|32
5EL5|1|2L|OMC|33
5EL5|1|2L|U|34
5EL5|1|2L|C|35
5EL5|1|2L|A|36
5EL5|1|2L|U|37
5EL5|1|2L|A|38
5EL5|1|2L|A|39
5EL5|1|2L|C|40
5EL5|1|2L|C|41
Current chains
- Chain 2L
- tRNAfMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 4L
- mRNA
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