HL_5EL6_004

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCUUGGGG

Length

9 nucleotides

Bulged bases

5EL6|1|13|U|189, 5EL6|1|13|G|190, 5EL6|1|13|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3668

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5EL6|1|13|C|186|||E
5EL6|1|13|C|186|||F
5EL6|1|13|C|187
5EL6|1|13|U|188
5EL6|1|13|U|189
5EL6|1|13|G|190
5EL6|1|13|G|191
5EL6|1|13|G|191|||A
5EL6|1|13|G|191|||B

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20