HL_5EL6_012

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

5EL6|1|13|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1788

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5EL6|1|13|C|458
5EL6|1|13|G|464
5EL6|1|13|A|465
5EL6|1|13|C|466
5EL6|1|13|G|467
5EL6|1|13|A|468
5EL6|1|13|G|474

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 7I

30S ribosomal protein S16