Loop HL_5EL6

3D structure

PDB id: 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CGCGGACAGCCAGGAUGUUGGAAGCAGCCAAGAGUGCGAGCUCACUGGUCGAGUG
Length: 55 nucleotides
Bulged bases: 5EL6|1|14|U|1061
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5EL6|1|14|C|1041
5EL6|1|14|G|1042
5EL6|1|14|C|1043
5EL6|1|14|G|1044
5EL6|1|14|G|1047
5EL6|1|14|A|1048
5EL6|1|14|C|1049
5EL6|1|14|A|1050
5EL6|1|14|G|1051
5EL6|1|14|C|1052
5EL6|1|14|C|1053
5EL6|1|14|A|1054
5EL6|1|14|G|1055
5EL6|1|14|G|1056
5EL6|1|14|A|1057
5EL6|1|14|U|1058
5EL6|1|14|G|1059
5EL6|1|14|U|1060
5EL6|1|14|U|1061
5EL6|1|14|G|1062
5EL6|1|14|G|1063
5EL6|1|14|A|1069
5EL6|1|14|A|1070
5EL6|1|14|G|1071
5EL6|1|14|C|1072
5EL6|1|14|A|1073
5EL6|1|14|G|1074
5EL6|1|14|C|1075
5EL6|1|14|C|1076
5EL6|1|14|A|1085
5EL6|1|14|A|1086
5EL6|1|14|G|1087
5EL6|1|14|A|1088
5EL6|1|14|G|1089
5EL6|1|14|U|1090
5EL6|1|14|G|1091
5EL6|1|14|C|1092
5EL6|1|14|G|1093
5EL6|1|14|A|1098
5EL6|1|14|G|1099
5EL6|1|14|C|1100
5EL6|1|14|U|1101
5EL6|1|14|C|1102
5EL6|1|14|A|1103
5EL6|1|14|C|1104
5EL6|1|14|U|1105
5EL6|1|14|G|1106
5EL6|1|14|G|1107
5EL6|1|14|U|1108
5EL6|1|14|C|1109
5EL6|1|14|G|1110
5EL6|1|14|A|1111
5EL6|1|14|G|1112
5EL6|1|14|U|1113
5EL6|1|14|G|1114

Current chains

Chain 14: 23S rRNA

Nearby chains

Chain 45: 50S ribosomal protein L16
Chain 59: 50S ribosomal protein L6
Chain D5: 50S ribosomal protein L25

HL_5EL6_060