HL_5EL6_139

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

5EL6|1|1H|U|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_139 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2518

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5EL6|1|1H|C|155
5EL6|1|1H|U|161
5EL6|1|1H|U|162
5EL6|1|1H|U|163
5EL6|1|1H|U|164
5EL6|1|1H|U|165
5EL6|1|1H|G|171

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain J8

50S ribosomal protein L28