HL_5EL6_153

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

5EL6|1|1H|U|614, 5EL6|1|1H|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_153 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.2603

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5EL6|1|1H|C|611
5EL6|1|1H|G|612
5EL6|1|1H|U|613
5EL6|1|1H|U|614
5EL6|1|1H|G|615
5EL6|1|1H|A|616
5EL6|1|1H|G|617

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4