HL_5EL6_170

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5EL6|1|1H|U|1396, 5EL6|1|1H|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_170 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1005

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5EL6|1|1H|G|1389
5EL6|1|1H|U|1390
5EL6|1|1H|U|1391
5EL6|1|1H|A|1392
5EL6|1|1H|A|1393
5EL6|1|1H|U|1394
5EL6|1|1H|A|1395
5EL6|1|1H|U|1396
5EL6|1|1H|U|1397
5EL6|1|1H|C|1398

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain F8

50S ribosomal protein L23