HL_5EL6_220

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

5EL6|1|3K|U|16, 5EL6|1|3K|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL6_220 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2669

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5EL6|1|3K|C|13
5EL6|1|3K|A|14
5EL6|1|3K|G|15
5EL6|1|3K|U|16
5EL6|1|3K|U|17
5EL6|1|3K|G|18
5EL6|1|3K|G|19
5EL6|1|3K|U|20
5EL6|1|3K|A|21
5EL6|1|3K|G|22

Current chains

Chain 3K

tRNALys

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1