HL_5EL6_234

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCUGCAACCCGAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1G|G|1312
5EL6|1|1G|U|1313
5EL6|1|1G|C|1314
5EL6|1|1G|U|1315
5EL6|1|1G|G|1316
5EL6|1|1G|C|1317
5EL6|1|1G|A|1318
5EL6|1|1G|A|1319
5EL6|1|1G|C|1320
5EL6|1|1G|C|1321
5EL6|1|1G|C|1322
5EL6|1|1G|G|1323
5EL6|1|1G|A|1324
5EL6|1|1G|C|1325

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 4A

30S ribosomal protein S13

Chain 5A

30S ribosomal protein S14 type Z

Chain AA

30S ribosomal protein S19