3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5EL7_028 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.1087
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5EL7|1|13|C|1314
5EL7|1|13|U|1315
5EL7|1|13|G|1316
5EL7|1|13|C|1317
5EL7|1|13|A|1318
5EL7|1|13|A|1319
5EL7|1|13|C|1320
5EL7|1|13|C|1321
5EL7|1|13|C|1322
5EL7|1|13|G|1323

Current chains

Chain 13
16S rRNA

Nearby chains

Chain 4I
30S ribosomal protein S13
Chain 5I
30S ribosomal protein S14 type Z
Chain AI
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.4667 s
Application loaded.