HL_5EL7_066

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5EL7|1|14|U|1396, 5EL7|1|14|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_066 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0898

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5EL7|1|14|G|1389
5EL7|1|14|U|1390
5EL7|1|14|U|1391
5EL7|1|14|A|1392
5EL7|1|14|A|1393
5EL7|1|14|U|1394
5EL7|1|14|A|1395
5EL7|1|14|U|1396
5EL7|1|14|U|1397
5EL7|1|14|C|1398

Current chains

Chain 14

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L23