HL_5EL7_071

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5EL7|1|14|A|1614, 5EL7|1|14|A|1616, 5EL7|1|14|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_071 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0647

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5EL7|1|14|C|1612
5EL7|1|14|G|1613
5EL7|1|14|A|1614
5EL7|1|14|C|1615
5EL7|1|14|A|1616
5EL7|1|14|C|1617
5EL7|1|14|A|1618
5EL7|1|14|G|1619

Current chains

Chain 14

23S rRNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34