HL_5EL7_082

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5EL7|1|14|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_082 not in the Motif Atlas

Homologous match to HL_7RQB_051

Geometric discrepancy: 0.3254

The information below is about HL_7RQB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|14|C|2143
5EL7|1|14|U|2144
5EL7|1|14|C|2145
5EL7|1|14|C|2146
5EL7|1|14|G|2147
5EL7|1|14|G|2148

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 2A

30S ribosomal protein S11

Chain 3L

Transfer RNA; tRNA