HL_5EL7_091

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

5EL7|1|14|A|2476, 5EL7|1|14|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_091 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.5242

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5EL7|1|14|C|2471
5EL7|1|14|G|2472
5EL7|1|14|U|2473
5EL7|1|14|C|2474
5EL7|1|14|C|2475
5EL7|1|14|A|2476
5EL7|1|14|C|2477
5EL7|1|14|A|2478
5EL7|1|14|G|2479

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16