HL_5EL7_104

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_104 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1673

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5EL7|1|1G|G|158
5EL7|1|1G|G|159
5EL7|1|1G|A|160
5EL7|1|1G|A|161
5EL7|1|1G|A|162
5EL7|1|1G|C|163

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain BA

30S ribosomal protein S20