HL_5EL7_155

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGGGGGCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_155 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2498

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5EL7|1|1H|C|654|||B
5EL7|1|1H|G|654|||C
5EL7|1|1H|G|654|||D
5EL7|1|1H|G|654|||N
5EL7|1|1H|G|654|||O
5EL7|1|1H|G|654|||P
5EL7|1|1H|C|654|||Q
5EL7|1|1H|C|654|||R
5EL7|1|1H|G|654|||S

Current chains

Chain 1H

23S rRNA

Nearby chains