HL_5EL7_158

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5EL7|1|1H|A|781, 5EL7|1|1H|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_158 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1302

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5EL7|1|1H|U|779
5EL7|1|1H|G|780
5EL7|1|1H|A|781
5EL7|1|1H|A|782
5EL7|1|1H|A|783
5EL7|1|1H|A|784
5EL7|1|1H|G|785

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 11

50S ribosomal protein L2