HL_5EL7_201

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGGCGUCAAGCCG

Length

13 nucleotides

Bulged bases

5EL7|1|1H|U|2797, 5EL7|1|1H|C|2798, 5EL7|1|1H|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_201 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2454

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5EL7|1|1H|C|2791
5EL7|1|1H|G|2792
5EL7|1|1H|G|2793
5EL7|1|1H|C|2794
5EL7|1|1H|G|2795
5EL7|1|1H|U|2797
5EL7|1|1H|C|2798
5EL7|1|1H|A|2799
5EL7|1|1H|A|2801
5EL7|1|1H|G|2802
5EL7|1|1H|C|2803
5EL7|1|1H|C|2804
5EL7|1|1H|G|2805

Current chains

Chain 1H

23S rRNA

Nearby chains