HL_5EL7_211

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_211 not in the Motif Atlas

Homologous match to HL_5IBB_211

Geometric discrepancy: 0.2767

The information below is about HL_5IBB_211

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

5EL7|1|1L|G|53
5EL7|1|1L|5MU|54
5EL7|1|1L|PSU|55
5EL7|1|1L|C|56
5EL7|1|1L|G|57
5EL7|1|1L|A|58
5EL7|1|1L|A|59
5EL7|1|1L|U|60
5EL7|1|1L|C|61

Current chains

Chain 1L

tRNALys

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16