HL_5EL7_232

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAUCAGCCAUGCC

Length

14 nucleotides

Bulged bases

5EL7|1|1G|C|1362|||A, 5EL7|1|1G|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1G|G|1355
5EL7|1|1G|G|1356
5EL7|1|1G|A|1357
5EL7|1|1G|U|1358
5EL7|1|1G|C|1359
5EL7|1|1G|A|1360
5EL7|1|1G|G|1361
5EL7|1|1G|C|1362
5EL7|1|1G|C|1362|||A
5EL7|1|1G|A|1363
5EL7|1|1G|U|1364
5EL7|1|1G|G|1365
5EL7|1|1G|C|1366
5EL7|1|1G|C|1367

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1B

30S ribosomal protein Thx

Chain 22

30S ribosomal protein S3

Chain 4A

30S ribosomal protein S13

Chain 5A

30S ribosomal protein S14 type Z

Chain 82

30S ribosomal protein S9