HL_5F5F_001
3D structure
- PDB id
- 5F5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray structure of Roquin ROQ domain in complex with a Selex-derived hexa-loop RNA motif
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGUUUUAG
- Length
- 8 nucleotides
- Bulged bases (A, C, G, U)
- 11U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_94651.4
- Basepair signature
- cWW-tSS
- Number of instances in this motif group
- 7
Unit IDs
5F5F|1|B|C|7
5F5F|1|B|G|8
5F5F|1|B|U|9
5F5F|1|B|U|10
5F5F|1|B|U|11
5F5F|1|B|U|12
5F5F|1|B|A|13
5F5F|1|B|G|14
Current chains
- Chain B
- RNA (5'-R(P*UP*GP*AP*CP*UP*GP*CP*GP*UP*UP*UP*UP*AP*GP*GP*AP*GP*UP*UP*A)-3')
Nearby chains
- Chain A
- Roquin-1
Coloring options: