HL_5F8K_025

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5F8K|1|1A|A|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_025 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.2846

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

5F8K|1|1A|C|931
5F8K|1|1A|C|932
5F8K|1|1A|C|933
5F8K|1|1A|A|934
5F8K|1|1A|C|935
5F8K|1|1A|C|936
5F8K|1|1A|A|937
5F8K|1|1A|G|938

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13