HL_5F8K_047
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 5F8K|1|1A|A|1935, 5F8K|1|1A|C|1936
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5F8K_047 not in the Motif Atlas
- Homologous match to HL_7RQB_048
- Geometric discrepancy: 0.0831
- The information below is about HL_7RQB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5F8K|1|1A|C|1931
5F8K|1|1A|G|1932
5F8K|1|1A|PSU|1933
5F8K|1|1A|A|1934
5F8K|1|1A|A|1935
5F8K|1|1A|C|1936
5F8K|1|1A|5MU|1937
5F8K|1|1A|A|1938
5F8K|1|1A|PSU|1939
5F8K|1|1A|A|1940
5F8K|1|1A|A|1941
5F8K|1|1A|OMC|1942
5F8K|1|1A|G|1943
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
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