HL_5F8K_048
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 5F8K|1|1A|U|1977
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5F8K_048 not in the Motif Atlas
- Homologous match to HL_7RQB_049
- Geometric discrepancy: 0.0514
- The information below is about HL_7RQB_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51824.1
- Basepair signature
- cWW-F-F-tSH-F-F
- Number of instances in this motif group
- 8
Unit IDs
5F8K|1|1A|G|1971
5F8K|1|1A|G|1972
5F8K|1|1A|U|1973
5F8K|1|1A|A|1974
5F8K|1|1A|A|1975
5F8K|1|1A|G|1976
5F8K|1|1A|U|1977
5F8K|1|1A|U|1978
5F8K|1|1A|C|1979
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1O
- 50S ribosomal protein L14
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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