HL_5F8K_071
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5F8K_071 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0878
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.1
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5F8K|1|1a|U|12
5F8K|1|1a|U|13
5F8K|1|1a|U|14
5F8K|1|1a|G|15
5F8K|1|1a|A|16
5F8K|1|1a|U|17
5F8K|1|1a|C|18
5F8K|1|1a|C|19
5F8K|1|1a|U|20
5F8K|1|1a|G|21
5F8K|1|1a|G|22
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1e
- 30S ribosomal protein S5
Coloring options: