HL_5F8K_080

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_080 not in the Motif Atlas

Homologous match to HL_6CZR_081

Geometric discrepancy: 0.1431

The information below is about HL_6CZR_081

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5F8K|1|1a|C|379
5F8K|1|1a|G|380
5F8K|1|1a|C|381
5F8K|1|1a|A|382
5F8K|1|1a|A|383
5F8K|1|1a|G|384

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16