HL_5F8K_082

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

5F8K|1|1a|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5F8K_082 not in the Motif Atlas

Homologous match to HL_6CZR_083

Geometric discrepancy: 0.1538

The information below is about HL_6CZR_083

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5F8K|1|1a|C|458
5F8K|1|1a|G|460
5F8K|1|1a|A|461
5F8K|1|1a|C|470
5F8K|1|1a|G|471
5F8K|1|1a|A|472
5F8K|1|1a|G|473

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16